Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015813067.1_cds_XP_016497387.1_11515
CDS Infomation

[gene=LOC107816207] [db_xref=GeneID:107816207] [protein=pentatricopeptide repeat-containing protein At1g76280-like isoform X3] [protein_id=XP_016497387.1] [location=join(1044..1057,1131..1200,1299..1356,2120..2298,2621..2728,3190..3372,4247..4708,4909..5004,5118..5291,5846..6073,6978..7121,7217..7405,7928..8002)] [gbkey=CDS]
Sequence

ATGCCTAAACTTCTGTTTATTTTTACCAGATCGAAAGTCCGCGCGAGTTCGATAGTGCAA
ACACTTTTAAATGATATTCGAAATGGAGGAAAGGAAATTGGAGGCTTTAGCCAAGCTATG
AGAACTTTCACTACCTCTAGCGGGCATGTCGAGGAGCCTGTTTCAGGATTAGGGCAAAAA
CAAATTGTTGATGCACTTGTCTTTGGAGAGAGAAGCAGAGCTGTTAGTCTTCTCTATGAC
TTTAGTCTTGGAAACAACAAATTGAGCGCCAATGATTTCGCTTCAATCCTGCAAACTTGC
GCAAGATTGCCTGATCCATTATTTGTGATGGAGACTTGGAAGATTATGGAGGAGAAGGAA
ATCGACATTAGTGCCAAGTGCTATTTTCTTGCTGCTCGAGCACTCTGTAAAGGGGGTTAC
TTGAAGGAGGCACTCAGTTTGATGAGTATCATGGAAGAAAACCCAAATAGTTATTCTATG
TTGCCTGTTTATAACAACTTCTTGGTGGCTTGTTCTGAAACACATACAGTAGATTATGCT
AATGAATGTATGGGTTTGATGGAGCATCAGATGGTGGGAAAGAATGAGATAACATATGCT
CAGTTTCTCAAGCTTGCAGTTTTGCAGCAAAACCTGTCTGCTGTCCATGAAATCTGGAAG
GAATGTAGTAAATATTACAGTCTCAGCGTTATTTCTCTTAGGAAGTTTATATGGTCCTTT
ACGGAGCTGAGAGATCTGCAATCAGCCTACACAACCTTACAACACATGGTGAGCTTGGTT
GTTAGAGAAAACTCTTACATAAGTAGAACTGCTGAAGGAAGGTTTTGTGATTTAAGATTG
GATATTCCAGCGCCTTCCACTGGCAACCTGAGTTTCATCGATGCATCTCTCAACACAGAG
GGTAGCACCAATTTTGACTTGGAAAGGCAAAGTATTGGCAGCATTGAAATAAGCACAGTA
AAAAAACCATTAAGTGCATCTGTTACGAAGCTTTTAAGGTGGTCCTTCAATGATGTCATG
CATGCTTGTGCAAAAGTTCAAAATTGTGATTTGGCTGAGCAGTTAATGTTACAGATGCAA
ACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGTTACC
ACAAGAGGATTTAGTGATGGAGTGGAAGTGCTAAAGGTTATGCAAGAGAAAAATATTAAG
CCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATCTGCAGCAGAGAGTTACAACTCGAC
AGGGCAGAGGCTTTCTTGGATGAGATGGCCGAAATCCGAAGTCCTCGTCCTTATAATGCT
TTCCTTGAAGCATGTGATGTCCTGGATCAACCTGAACGAGCAGTTCAGATATTGGCTAAG
ATGAAAAAGTTGAATCTCCAGCCAAATATCAGGACATATGAATTGCTATTCTCATTGTTT
GGTAATGTGAATTCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAA
AGGATAAATGCTATAGAAATGGATATGATGAAATACGGCCTTCAGCACAGTCACCTGTCA
TTGAAGAATGTGTTGAAAGCGCTTGGAACAGAGGGGATGATAAAGGAGCTGATTCAATAT
TTACATGCTGCGGAGAATCGGTTCTCTCGTTATGACACTTATATGATCACACCTGTCTAT
AATACAGTTTTGCATTCCCTTGTTGAGGCTAAAGAGAGCCAAATGGCAACGCAGATTTTC
AAATCTATGGTGTCTTCTGGAGTTCCACCCGATGCTGCAACATATAACATCATGATTGAT
TGCTGTAGCATTATTGGATGTTTCAGATCTGCACTTACCCTGATCTCTATGATGTTACAC
AATGGTTTCAATCCTCAAGCAGTGACTTTAACTGGTCTGTTAAAGATATGCAAATGGTGC
CCACTGATGTTCCATCTGAGAACTGAGTTGTTTCTGCTGTCAGATATCGTTGAGATCTGA

Peptide Sequence

PEP ID

XP_016497387.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like isoform X3 [Nicotiana tabacum]
Sequence

MPKLLFIFTRSKVRASSIVQTLLNDIRNGGKEIGGFSQAMRTFTTSSGHVEEPVSGLGQK
QIVDALVFGERSRAVSLLYDFSLGNNKLSANDFASILQTCARLPDPLFVMETWKIMEEKE
IDISAKCYFLAARALCKGGYLKEALSLMSIMEENPNSYSMLPVYNNFLVACSETHTVDYA
NECMGLMEHQMVGKNEITYAQFLKLAVLQQNLSAVHEIWKECSKYYSLSVISLRKFIWSF
TELRDLQSAYTTLQHMVSLVVRENSYISRTAEGRFCDLRLDIPAPSTGNLSFIDASLNTE
GSTNFDLERQSIGSIEISTVKKPLSASVTKLLRWSFNDVMHACAKVQNCDLAEQLMLQMQ
TLGLQPSGSTYDGFIRAIVTTRGFSDGVEVLKVMQEKNIKPHDSTLAVLAVICSRELQLD
RAEAFLDEMAEIRSPRPYNAFLEACDVLDQPERAVQILAKMKKLNLQPNIRTYELLFSLF
GNVNSPYEEGNMLSQVDVAKRINAIEMDMMKYGLQHSHLSLKNVLKALGTEGMIKELIQY
LHAAENRFSRYDTYMITPVYNTVLHSLVEAKESQMATQIFKSMVSSGVPPDAATYNIMID
CCSIIGCFRSALTLISMMLHNGFNPQAVTLTGLLKICKWCPLMFHLRTELFLLSDIVEI

Transcript Sequence

Gene sequence data has not been registered.